HL_5I4L_160

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

5I4L|1|5|G|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5I4L_160 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.0802

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5I4L|1|5|A|2164
5I4L|1|5|G|2165
5I4L|1|5|A|2166
5I4L|1|5|A|2167
5I4L|1|5|A|2168
5I4L|1|5|G|2169
5I4L|1|5|U|2170

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l2

60S ribosomal protein L2-A

Chain l8

60S ribosomal protein L8-A

Chain m5

60S ribosomal protein L15-A