3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CUUG
Length
4 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5I4L_185 not in the Motif Atlas
Geometric match to HL_4V88_192
Geometric discrepancy: 0.1563
The information below is about HL_4V88_192
Detailed Annotation
Mini UNCG
Broad Annotation
No text annotation
Motif group
HL_43793.1
Basepair signature
cWW-F
Number of instances in this motif group
50

Unit IDs

5I4L|1|5|C|3350
5I4L|1|5|U|3351
5I4L|1|5|U|3352
5I4L|1|5|G|3353

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain s8
40S ribosomal protein S8-A

Coloring options:


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