3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GAAUUCAUUUUC
Length
12 nucleotides
Bulged bases
5I4L|1|1|C|2539, 5I4L|1|1|A|2540, 5I4L|1|1|U|2541
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5I4L|1|1|G|2534
5I4L|1|1|A|2535
5I4L|1|1|A|2536
5I4L|1|1|U|2537
5I4L|1|1|U|2538
5I4L|1|1|C|2539
5I4L|1|1|A|2540
5I4L|1|1|U|2541
5I4L|1|1|U|2542
5I4L|1|1|U|2543
5I4L|1|1|U|2544
5I4L|1|1|C|2545

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain L8
60S ribosomal protein L8-A
Chain O4
60S ribosomal protein L34-A
Chain S1
40S ribosomal protein S1-A

Coloring options:

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