HL_5I4L_235

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUCGAAAUGACC

Length

13 nucleotides

Bulged bases

5I4L|1|5|G|1024, 5I4L|1|5|A|1025, 5I4L|1|5|U|1028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5I4L|1|5|G|1020
5I4L|1|5|G|1021
5I4L|1|5|U|1022
5I4L|1|5|C|1023
5I4L|1|5|G|1024
5I4L|1|5|A|1025
5I4L|1|5|A|1026
5I4L|1|5|A|1027
5I4L|1|5|U|1028
5I4L|1|5|G|1029
5I4L|1|5|A|1030
5I4L|1|5|C|1031
5I4L|1|5|C|1032

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain c5

40S ribosomal protein S15

Chain m1

60S ribosomal protein L11-B

Chain sM

Suppressor protein STM1,Suppressor protein STM1,Suppressor protein STM1