HL_5I4L_238

3D structure

PDB id

5I4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Amicoumacin A bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAGGGCCCAUUCGGGUCUUG

Length

20 nucleotides

Bulged bases

5I4L|1|6|C|489, 5I4L|1|6|U|493, 5I4L|1|6|U|494, 5I4L|1|6|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5I4L|1|6|C|484
5I4L|1|6|A|485
5I4L|1|6|G|486
5I4L|1|6|G|487
5I4L|1|6|G|488
5I4L|1|6|C|489
5I4L|1|6|C|490
5I4L|1|6|C|491
5I4L|1|6|A|492
5I4L|1|6|U|493
5I4L|1|6|U|494
5I4L|1|6|C|495
5I4L|1|6|G|496
5I4L|1|6|G|497
5I4L|1|6|G|498
5I4L|1|6|U|499
5I4L|1|6|C|500
5I4L|1|6|U|501
5I4L|1|6|U|502
5I4L|1|6|G|503

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain e0

40S ribosomal protein S30-A

Chain s9

40S ribosomal protein S9-A