3D structure

PDB id
5I4L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Amicoumacin A bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UAGAGAAGGGGGCAACUCCAUCUCAG
Length
26 nucleotides
Bulged bases
5I4L|1|6|C|1700, 5I4L|1|6|A|1701
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5I4L|1|6|U|1688
5I4L|1|6|A|1689
5I4L|1|6|G|1690
5I4L|1|6|A|1691
5I4L|1|6|G|1692
5I4L|1|6|A|1693
5I4L|1|6|A|1694
5I4L|1|6|G|1695
5I4L|1|6|G|1696
5I4L|1|6|G|1697
5I4L|1|6|G|1698
5I4L|1|6|G|1699
5I4L|1|6|C|1700
5I4L|1|6|A|1701
5I4L|1|6|A|1702
5I4L|1|6|C|1703
5I4L|1|6|U|1704
5I4L|1|6|C|1705
5I4L|1|6|C|1706
5I4L|1|6|A|1707
5I4L|1|6|U|1708
5I4L|1|6|C|1709
5I4L|1|6|U|1710
5I4L|1|6|C|1711
5I4L|1|6|A|1712
5I4L|1|6|G|1713

Current chains

Chain 6
18S ribosomal RNA

Nearby chains

Chain n4
60S ribosomal protein L24-A
Chain s6
40S ribosomal protein S6-A

Coloring options:

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