HL_5IB7_009

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5IB7|1|13|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB7_009 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1649

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

5IB7|1|13|C|342
5IB7|1|13|U|343
5IB7|1|13|A|344
5IB7|1|13|C|345
5IB7|1|13|G|346
5IB7|1|13|G|347

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 68

50S ribosomal protein L14

Chain B8

50S ribosomal protein L19