HL_5IB7_155

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

GGGGGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB7_155 not in the Motif Atlas

Geometric match to HL_4KR9_003

Geometric discrepancy: 0.3123

The information below is about HL_4KR9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70782.2

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5IB7|1|1H|G|654|||C
5IB7|1|1H|G|654|||D
5IB7|1|1H|G|654|||N
5IB7|1|1H|G|654|||O
5IB7|1|1H|G|654|||P
5IB7|1|1H|C|654|||Q
5IB7|1|1H|C|654|||R

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains