HL_5IB7_193

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

5IB7|1|1H|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB7_193 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.0481

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

5IB7|1|1H|C|2404
5IB7|1|1H|G|2405
5IB7|1|1H|U|2406
5IB7|1|1H|G|2407
5IB7|1|1H|U|2408
5IB7|1|1H|G|2409
5IB7|1|1H|G|2410
5IB7|1|1H|A|2411
5IB7|1|1H|A|2412
5IB7|1|1H|G|2413

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 78

50S ribosomal protein L15

Chain J8

50S ribosomal protein L28