HL_5IB7_201

3D structure

PDB id

5IB7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet, near-cognate tRNALys with U-G mismatch in the A-site and antibiotic paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.99 Å

Loop

Sequence

CGGCGAGCCGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB7_201 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.583

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5IB7|1|1H|C|2791
5IB7|1|1H|G|2792
5IB7|1|1H|G|2793
5IB7|1|1H|C|2794
5IB7|1|1H|G|2795
5IB7|1|1H|A|2801
5IB7|1|1H|G|2802
5IB7|1|1H|C|2803
5IB7|1|1H|C|2804
5IB7|1|1H|G|2805
5IB7|1|1H|G|2807

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains