HL_5IB8_004

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CCUUGGG

Length

7 nucleotides

Bulged bases

5IB8|1|13|U|189, 5IB8|1|13|G|190, 5IB8|1|13|G|191

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_004 not in the Motif Atlas

Homologous match to HL_6CZR_075

Geometric discrepancy: 0.3291

The information below is about HL_6CZR_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.4

Basepair signature

cWW-F-F

Number of instances in this motif group

28

Unit IDs

5IB8|1|13|C|186|||F
5IB8|1|13|C|187
5IB8|1|13|U|188
5IB8|1|13|U|189
5IB8|1|13|G|190
5IB8|1|13|G|191
5IB8|1|13|G|191|||A

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 8I

30S ribosomal protein S17

Chain BI

30S ribosomal protein S20