HL_5IB8_008

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0895

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5IB8|1|13|C|320
5IB8|1|13|A|321
5IB8|1|13|C|322
5IB8|1|13|U|323
5IB8|1|13|G|324
5IB8|1|13|A|325
5IB8|1|13|G|326
5IB8|1|13|A|327
5IB8|1|13|C|328
5IB8|1|13|A|329
5IB8|1|13|C|330
5IB8|1|13|G|331
5IB8|1|13|G|332
5IB8|1|13|G|333

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 7I

30S ribosomal protein S16

Chain BI

30S ribosomal protein S20