HL_5IB8_022

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_022 not in the Motif Atlas

Homologous match to HL_4LFB_022

Geometric discrepancy: 0.1798

The information below is about HL_4LFB_022

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

5IB8|1|13|U|1012
5IB8|1|13|G|1013
5IB8|1|13|A|1014
5IB8|1|13|A|1015
5IB8|1|13|A|1016
5IB8|1|13|G|1017

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 5I

30S ribosomal protein S14 type Z

Chain AI

30S ribosomal protein S19