HL_5IB8_044

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

5IB8|1|14|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_044 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.0648

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5IB8|1|14|G|382
5IB8|1|14|U|383
5IB8|1|14|U|384
5IB8|1|14|C|385
5IB8|1|14|G|386
5IB8|1|14|U|387
5IB8|1|14|G|388
5IB8|1|14|G|389
5IB8|1|14|A|390
5IB8|1|14|G|391
5IB8|1|14|C|392

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 35

50S ribosomal protein L15

Chain F5

50S ribosomal protein L28