HL_5IB8_060

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CCGCGGACAUGGUCGAGUGG

Length

20 nucleotides

Bulged bases

5IB8|1|14|C|1049, 5IB8|1|14|A|1050

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IB8|1|14|C|1040
5IB8|1|14|C|1041
5IB8|1|14|G|1042
5IB8|1|14|C|1043
5IB8|1|14|G|1044
5IB8|1|14|G|1047
5IB8|1|14|A|1048
5IB8|1|14|C|1049
5IB8|1|14|A|1050
5IB8|1|14|U|1105
5IB8|1|14|G|1106
5IB8|1|14|G|1107
5IB8|1|14|U|1108
5IB8|1|14|C|1109
5IB8|1|14|G|1110
5IB8|1|14|A|1111
5IB8|1|14|G|1112
5IB8|1|14|U|1113
5IB8|1|14|G|1114
5IB8|1|14|G|1115

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 59

50S ribosomal protein L6

Chain D5

50S ribosomal protein L25