HL_5IB8_066

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

5IB8|1|14|U|1396, 5IB8|1|14|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_066 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.0637

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5IB8|1|14|G|1389
5IB8|1|14|U|1390
5IB8|1|14|U|1391
5IB8|1|14|A|1392
5IB8|1|14|A|1393
5IB8|1|14|U|1394
5IB8|1|14|A|1395
5IB8|1|14|U|1396
5IB8|1|14|U|1397
5IB8|1|14|C|1398

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L23