HL_5IB8_075

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CGCAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_075 not in the Motif Atlas

Homologous match to HL_7RQB_044

Geometric discrepancy: 0.0661

The information below is about HL_7RQB_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76539.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5IB8|1|14|C|1752
5IB8|1|14|G|1753
5IB8|1|14|C|1754
5IB8|1|14|A|1755
5IB8|1|14|G|1756

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 75

50S ribosomal protein L19