HL_5IB8_084

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

5IB8|1|14|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_084 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.0948

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IB8|1|14|C|2248
5IB8|1|14|U|2249
5IB8|1|14|G|2250
5IB8|1|14|G|2251
5IB8|1|14|G|2252
5IB8|1|14|G|2253
5IB8|1|14|C|2254
5IB8|1|14|G|2255
5IB8|1|14|G|2256

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 2L

Transfer RNA; tRNA

Chain 45

50S ribosomal protein L16

Chain E5

50S ribosomal protein L27