HL_5IB8_105

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CUUUG

Length

5 nucleotides

Bulged bases

5IB8|1|1G|U|208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_105 not in the Motif Atlas

Homologous match to HL_4LFB_005

Geometric discrepancy: 0.2451

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

5IB8|1|1G|C|201
5IB8|1|1G|U|208
5IB8|1|1G|U|209
5IB8|1|1G|U|210
5IB8|1|1G|G|216

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains