HL_5IB8_109

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5IB8|1|1G|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_109 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.145

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5IB8|1|1G|C|342
5IB8|1|1G|U|343
5IB8|1|1G|A|344
5IB8|1|1G|C|345
5IB8|1|1G|G|346
5IB8|1|1G|G|347

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L14

Chain 75

50S ribosomal protein L19