HL_5IB8_111

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5IB8|1|1G|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_111 not in the Motif Atlas

Homologous match to HL_6CZR_082

Geometric discrepancy: 0.4834

The information below is about HL_6CZR_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50006.1

Basepair signature

cWW-F-F

Number of instances in this motif group

6

Unit IDs

5IB8|1|1G|C|419
5IB8|1|1G|U|420
5IB8|1|1G|U|421
5IB8|1|1G|C|422
5IB8|1|1G|G|423
5IB8|1|1G|G|424

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 22

30S ribosomal protein S3

Chain 32

30S ribosomal protein S4