HL_5IB8_134

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CGGUAGCGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_134 not in the Motif Atlas

Homologous match to HL_7RQB_002

Geometric discrepancy: 0.0942

The information below is about HL_7RQB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

5IB8|1|1H|C|87
5IB8|1|1H|G|88
5IB8|1|1H|G|89
5IB8|1|1H|U|90
5IB8|1|1H|A|91
5IB8|1|1H|G|92
5IB8|1|1H|C|93
5IB8|1|1H|G|94
5IB8|1|1H|G|95

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain F8

50S ribosomal protein L23

Chain G8

50S ribosomal protein L24

Chain K8

50S ribosomal protein L29