HL_5IB8_146

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

5IB8|1|1H|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_146 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.09

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

5IB8|1|1H|G|410
5IB8|1|1H|G|411
5IB8|1|1H|A|412
5IB8|1|1H|C|413
5IB8|1|1H|C|414
5IB8|1|1H|A|415
5IB8|1|1H|C|416
5IB8|1|1H|C|417

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 78

50S ribosomal protein L15

Chain J8

50S ribosomal protein L28