HL_5IB8_170

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CCGUACGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_170 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.3304

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

5IB8|1|1H|C|1532
5IB8|1|1H|C|1533
5IB8|1|1H|G|1534
5IB8|1|1H|U|1535
5IB8|1|1H|A|1536
5IB8|1|1H|C|1537
5IB8|1|1H|G|1538
5IB8|1|1H|G|1539

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains