HL_5IB8_181

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

5IB8|1|1H|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_181 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.1895

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

5IB8|1|1H|G|1949
5IB8|1|1H|G|1950
5IB8|1|1H|U|1951
5IB8|1|1H|A|1952
5IB8|1|1H|A|1953
5IB8|1|1H|G|1954
5IB8|1|1H|U|1955
5IB8|1|1H|U|1956
5IB8|1|1H|C|1957

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 68

50S ribosomal protein L14