HL_5IB8_191

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

5IB8|1|1H|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_191 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.0545

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

5IB8|1|1H|C|2404
5IB8|1|1H|G|2405
5IB8|1|1H|U|2406
5IB8|1|1H|G|2407
5IB8|1|1H|U|2408
5IB8|1|1H|G|2409
5IB8|1|1H|G|2410
5IB8|1|1H|A|2411
5IB8|1|1H|A|2412
5IB8|1|1H|G|2413

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 78

50S ribosomal protein L15

Chain J8

50S ribosomal protein L28