HL_5IB8_192

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

5IB8|1|1H|A|2476

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_192 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3221

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

5IB8|1|1H|C|2471
5IB8|1|1H|G|2472
5IB8|1|1H|U|2473
5IB8|1|1H|C|2474
5IB8|1|1H|C|2475
5IB8|1|1H|A|2476
5IB8|1|1H|C|2477
5IB8|1|1H|A|2478
5IB8|1|1H|G|2479

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 1K

Transfer RNA; tRNA

Chain 88

50S ribosomal protein L16