HL_5IB8_200

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

5IB8|1|1H|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_200 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.0531

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5IB8|1|1H|G|2819
5IB8|1|1H|A|2820
5IB8|1|1H|A|2821
5IB8|1|1H|G|2822
5IB8|1|1H|A|2823
5IB8|1|1H|C|2824
5IB8|1|1H|C|2825
5IB8|1|1H|A|2826
5IB8|1|1H|C|2827

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain 98

50S ribosomal protein L17

Chain B8

50S ribosomal protein L19