HL_5IB8_213

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CAGCCCGGUAG

Length

11 nucleotides

Bulged bases

5IB8|1|2L|G|19, 5IB8|1|2L|G|20, 5IB8|1|2L|U|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_213 not in the Motif Atlas

Homologous match to HL_1QF6_001

Geometric discrepancy: 0.1365

The information below is about HL_1QF6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

5IB8|1|2L|C|13
5IB8|1|2L|A|14
5IB8|1|2L|G|15
5IB8|1|2L|C|16
5IB8|1|2L|C|17
5IB8|1|2L|C|18
5IB8|1|2L|G|19
5IB8|1|2L|G|20
5IB8|1|2L|U|21
5IB8|1|2L|A|22
5IB8|1|2L|G|23

Current chains

Chain 2L

tRNAfMet

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 49

50S ribosomal protein L5