HL_5IB8_216

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

CUCAGUGAG

Length

9 nucleotides

Bulged bases

5IB8|1|3K|U|16

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IB8_216 not in the Motif Atlas

Homologous match to HL_5E6M_001

Geometric discrepancy: 0.4233

The information below is about HL_5E6M_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_99769.3

Basepair signature

cWW-cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5IB8|1|3K|C|11
5IB8|1|3K|U|12
5IB8|1|3K|C|13
5IB8|1|3K|A|14
5IB8|1|3K|G|15
5IB8|1|3K|U|16
5IB8|1|3K|G|22
5IB8|1|3K|A|23
5IB8|1|3K|G|24

Current chains

Chain 3K

tRNALys

Nearby chains

Chain 1H

Large subunit ribosomal RNA; LSU rRNA

Chain 2I

30S ribosomal protein S11