HL_5IB8_232
3D structure
- PDB id
- 5IB8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.13 Å
Loop
- Sequence
- ACU(U8U)UU(T6A)A(PSU)
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: U8U, T6A, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IB8_232 not in the Motif Atlas
- Homologous match to HL_5E81_235
- Geometric discrepancy: 0.1052
- The information below is about HL_5E81_235
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.5
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 50
Unit IDs
5IB8|1|1K|A|31
5IB8|1|1K|C|32
5IB8|1|1K|U|33
5IB8|1|1K|U8U|34
5IB8|1|1K|U|35
5IB8|1|1K|U|36
5IB8|1|1K|T6A|37
5IB8|1|1K|A|38
5IB8|1|1K|PSU|39
Current chains
- Chain 1K
- tRNALys
Nearby chains
- Chain 13
- Small subunit ribosomal RNA; SSU rRNA
- Chain 1H
- Large subunit ribosomal RNA; LSU rRNA
- Chain 3I
- 30S ribosomal protein S12
- Chain 4K
- mRNA
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