HL_5IB8_235

3D structure

PDB id

5IB8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.13 Å

Loop

Sequence

GGGGAUGACCC

Length

11 nucleotides

Bulged bases

5IB8|1|14|A|1174, 5IB8|1|14|G|1176, 5IB8|1|14|A|1177

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IB8|1|14|G|1169
5IB8|1|14|G|1170
5IB8|1|14|G|1171
5IB8|1|14|G|1173
5IB8|1|14|A|1174
5IB8|1|14|U|1175
5IB8|1|14|G|1176
5IB8|1|14|A|1177
5IB8|1|14|C|1178
5IB8|1|14|C|1179
5IB8|1|14|C|1180

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 95

50S ribosomal protein L21