HL_5IBB_028
3D structure
- PDB id
- 5IBB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.96 Å
Loop
- Sequence
- CUGCAACCCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IBB_028 not in the Motif Atlas
- Homologous match to HL_4LFB_029
- Geometric discrepancy: 0.0953
- The information below is about HL_4LFB_029
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_02887.3
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5IBB|1|13|C|1314
5IBB|1|13|U|1315
5IBB|1|13|G|1316
5IBB|1|13|C|1317
5IBB|1|13|A|1318
5IBB|1|13|A|1319
5IBB|1|13|C|1320
5IBB|1|13|C|1321
5IBB|1|13|C|1322
5IBB|1|13|G|1323
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 4I
- 30S ribosomal protein S13
- Chain 5I
- 30S ribosomal protein S14 type Z
- Chain AI
- 30S ribosomal protein S19
- Chain M8
- 50S ribosomal protein L31
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