HL_5IBB_043

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

5IBB|1|14|G|329, 5IBB|1|14|A|330, 5IBB|1|14|A|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IBB_043 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.088

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

5IBB|1|14|G|327
5IBB|1|14|U|328
5IBB|1|14|G|329
5IBB|1|14|A|330
5IBB|1|14|A|331
5IBB|1|14|A|332
5IBB|1|14|G|333
5IBB|1|14|C|334
5IBB|1|14|C|335

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 39

50S ribosomal protein L4

Chain C5

50S ribosomal protein L24