3D structure

PDB id
5IBB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
2.96 Å

Loop

Sequence
CUCCGG
Length
6 nucleotides
Bulged bases
5IBB|1|14|C|2145
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5IBB_082 not in the Motif Atlas
Homologous match to HL_3U4M_001
Geometric discrepancy: 0.3448
The information below is about HL_3U4M_001
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_34617.5
Basepair signature
cWW-tSW-F
Number of instances in this motif group
57

Unit IDs

5IBB|1|14|C|2143
5IBB|1|14|U|2144
5IBB|1|14|C|2145
5IBB|1|14|C|2146
5IBB|1|14|G|2147
5IBB|1|14|G|2148

Current chains

Chain 14
23S ribosomal RNA

Nearby chains

Chain 13
Small subunit ribosomal RNA; SSU rRNA
Chain 2A
30S ribosomal protein S11

Coloring options:


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