3D structure

PDB id
5IBB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
2.96 Å

Loop

Sequence
CGUGUGGAAG
Length
10 nucleotides
Bulged bases
5IBB|1|14|U|2406
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5IBB_090 not in the Motif Atlas
Homologous match to HL_7RQB_059
Geometric discrepancy: 0.0751
The information below is about HL_7RQB_059
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_40210.2
Basepair signature
cWW-tSH-F
Number of instances in this motif group
12

Unit IDs

5IBB|1|14|C|2404
5IBB|1|14|G|2405
5IBB|1|14|U|2406
5IBB|1|14|G|2407
5IBB|1|14|U|2408
5IBB|1|14|G|2409
5IBB|1|14|G|2410
5IBB|1|14|A|2411
5IBB|1|14|A|2412
5IBB|1|14|G|2413

Current chains

Chain 14
23S ribosomal RNA

Nearby chains

Chain 35
50S ribosomal protein L15
Chain F5
50S ribosomal protein L28

Coloring options:


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