HL_5IBB_109

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IBB_109 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0904

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5IBB|1|1G|C|320
5IBB|1|1G|A|321
5IBB|1|1G|C|322
5IBB|1|1G|U|323
5IBB|1|1G|G|324
5IBB|1|1G|A|325
5IBB|1|1G|G|326
5IBB|1|1G|A|327
5IBB|1|1G|C|328
5IBB|1|1G|A|329
5IBB|1|1G|C|330
5IBB|1|1G|G|331
5IBB|1|1G|G|332
5IBB|1|1G|G|333

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 7A

30S ribosomal protein S16

Chain BA

30S ribosomal protein S20