3D structure

PDB id
5IBB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
2.96 Å

Loop

Sequence
GUUCGGC
Length
7 nucleotides
Bulged bases
5IBB|1|1G|U|1136
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5IBB_127 not in the Motif Atlas
Homologous match to HL_6CZR_097
Geometric discrepancy: 0.2936
The information below is about HL_6CZR_097
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5IBB|1|1G|G|1134
5IBB|1|1G|U|1135
5IBB|1|1G|U|1136
5IBB|1|1G|C|1137
5IBB|1|1G|G|1138
5IBB|1|1G|G|1139
5IBB|1|1G|C|1140

Current chains

Chain 1G
16S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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