HL_5IBB_201

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CGGCGUCAAGCCGG

Length

14 nucleotides

Bulged bases

5IBB|1|1H|U|2797, 5IBB|1|1H|C|2798

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IBB_201 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.5463

The information below is about HL_5J7L_200

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5IBB|1|1H|C|2791
5IBB|1|1H|G|2792
5IBB|1|1H|G|2793
5IBB|1|1H|C|2794
5IBB|1|1H|G|2795
5IBB|1|1H|U|2797
5IBB|1|1H|C|2798
5IBB|1|1H|A|2799
5IBB|1|1H|A|2801
5IBB|1|1H|G|2802
5IBB|1|1H|C|2803
5IBB|1|1H|C|2804
5IBB|1|1H|G|2805
5IBB|1|1H|G|2807

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains