HL_5IBB_202

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

5IBB|1|1H|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IBB_202 not in the Motif Atlas

Homologous match to HL_7RQB_068

Geometric discrepancy: 0.0676

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5IBB|1|1H|G|2819
5IBB|1|1H|A|2820
5IBB|1|1H|A|2821
5IBB|1|1H|G|2822
5IBB|1|1H|A|2823
5IBB|1|1H|C|2824
5IBB|1|1H|C|2825
5IBB|1|1H|A|2826
5IBB|1|1H|C|2827

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain 98

50S ribosomal protein L17

Chain B8

50S ribosomal protein L19