HL_5IBB_220

3D structure

PDB id

5IBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GUUCGAUCC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IBB_220 not in the Motif Atlas

Homologous match to HL_6GSL_222

Geometric discrepancy: 0.3608

The information below is about HL_6GSL_222

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IBB|1|3K|G|53
5IBB|1|3K|U|54
5IBB|1|3K|U|55
5IBB|1|3K|C|56
5IBB|1|3K|G|57
5IBB|1|3K|A|58
5IBB|1|3K|U|59
5IBB|1|3K|C|60
5IBB|1|3K|C|61

Current chains

Chain 3K

tRNAVal

Nearby chains

Chain 1H

Large subunit ribosomal RNA; LSU rRNA

Chain 71

50S ribosomal protein L1