HL_5IMQ_010

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUUGGG

Length

7 nucleotides

Bulged bases

5IMQ|1|A|U|189, 5IMQ|1|A|G|190, 5IMQ|1|A|G|191

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_010 not in the Motif Atlas

Homologous match to HL_6CZR_075

Geometric discrepancy: 0.3497

The information below is about HL_6CZR_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.4

Basepair signature

cWW-F-F

Number of instances in this motif group

28

Unit IDs

5IMQ|1|A|C|186|||F
5IMQ|1|A|C|187
5IMQ|1|A|U|188
5IMQ|1|A|U|189
5IMQ|1|A|G|190
5IMQ|1|A|G|191
5IMQ|1|A|G|191|||A

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain U

30S ribosomal protein S17

Chain X

30S ribosomal protein S20