HL_5IMQ_033

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCGAAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_033 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3352

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5IMQ|1|A|G|1164
5IMQ|1|A|C|1165
5IMQ|1|A|G|1166
5IMQ|1|A|A|1167
5IMQ|1|A|A|1169
5IMQ|1|A|A|1170
5IMQ|1|A|G|1171
5IMQ|1|A|C|1172

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain F

30S ribosomal protein S2