HL_5IMQ_044

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAACUGAAACAUCUCAGUAC

Length

21 nucleotides

Bulged bases

5IMQ|1|D|A|196, 5IMQ|1|D|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5IMQ|1|D|G|188
5IMQ|1|D|G|189
5IMQ|1|D|A|190
5IMQ|1|D|A|191
5IMQ|1|D|C|192
5IMQ|1|D|U|193
5IMQ|1|D|G|194
5IMQ|1|D|A|195
5IMQ|1|D|A|196
5IMQ|1|D|A|197
5IMQ|1|D|C|198
5IMQ|1|D|A|199
5IMQ|1|D|U|200
5IMQ|1|D|C|201
5IMQ|1|D|U|202
5IMQ|1|D|C|203
5IMQ|1|D|A|204
5IMQ|1|D|G|205
5IMQ|1|D|U|206
5IMQ|1|D|A|207
5IMQ|1|D|C|208

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain h

50S ribosomal protein L15

Chain v

50S ribosomal protein L31

Chain y

50S ribosomal protein L34