HL_5IMQ_050

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGAAAGCC

Length

9 nucleotides

Bulged bases

5IMQ|1|D|G|329, 5IMQ|1|D|A|330, 5IMQ|1|D|A|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_050 not in the Motif Atlas

Homologous match to HL_4WF9_012

Geometric discrepancy: 0.1666

The information below is about HL_4WF9_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.4

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

16

Unit IDs

5IMQ|1|D|G|327
5IMQ|1|D|U|328
5IMQ|1|D|G|329
5IMQ|1|D|A|330
5IMQ|1|D|A|331
5IMQ|1|D|A|332
5IMQ|1|D|G|333
5IMQ|1|D|C|334
5IMQ|1|D|C|335

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L4

Chain q

50S ribosomal protein L24