HL_5IMQ_055

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_055 not in the Motif Atlas

Geometric match to HL_5VW1_001

Geometric discrepancy: 0.2038

The information below is about HL_5VW1_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

5IMQ|1|D|C|544
5IMQ|1|D|G|545
5IMQ|1|D|C|546
5IMQ|1|D|A|547
5IMQ|1|D|A|548
5IMQ|1|D|G|549

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain n

50S ribosomal protein L21