HL_5IMQ_056
3D structure
- PDB id
- 5IMQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosome bound to cofactor at 3.8 angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UAUUGAAGCA
- Length
- 10 nucleotides
- Bulged bases
- 5IMQ|1|D|C|574
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5IMQ_056 not in the Motif Atlas
- Geometric match to HL_7A0S_018
- Geometric discrepancy: 0.2705
- The information below is about HL_7A0S_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
5IMQ|1|D|U|566
5IMQ|1|D|A|567
5IMQ|1|D|U|568
5IMQ|1|D|U|569
5IMQ|1|D|G|570
5IMQ|1|D|A|571
5IMQ|1|D|A|572
5IMQ|1|D|G|573
5IMQ|1|D|C|574
5IMQ|1|D|A|575
Current chains
- Chain D
- 23S ribosomal RNA
Nearby chains
- Chain b
- 50S ribosomal protein L3
- Chain h
- 50S ribosomal protein L15
- Chain n
- 50S ribosomal protein L21
- Chain w
- 50S ribosomal protein L32
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