HL_5IMQ_058

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCGAACAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_058 not in the Motif Atlas

Homologous match to HL_7A0S_021

Geometric discrepancy: 0.5767

The information below is about HL_7A0S_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28075.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5IMQ|1|D|C|640
5IMQ|1|D|C|641
5IMQ|1|D|G|642
5IMQ|1|D|A|643
5IMQ|1|D|A|644
5IMQ|1|D|C|645
5IMQ|1|D|A|646
5IMQ|1|D|G|647

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain x

50S ribosomal protein L33

Chain z

50S ribosomal protein L35