HL_5IMQ_068

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCCGCGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_068 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.3928

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5IMQ|1|D|C|1221
5IMQ|1|D|C|1222
5IMQ|1|D|C|1223
5IMQ|1|D|G|1224
5IMQ|1|D|C|1225
5IMQ|1|D|G|1226
5IMQ|1|D|A|1227
5IMQ|1|D|G|1228

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L20

Chain n

50S ribosomal protein L21