HL_5IMQ_070

3D structure

PDB id

5IMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosome bound to cofactor at 3.8 angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

5IMQ|1|D|G|1325, 5IMQ|1|D|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5IMQ_070 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.2827

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

5IMQ|1|D|G|1324
5IMQ|1|D|G|1325
5IMQ|1|D|U|1326
5IMQ|1|D|C|1327
5IMQ|1|D|G|1328
5IMQ|1|D|U|1329
5IMQ|1|D|C|1330

Current chains

Chain D

23S ribosomal RNA

Nearby chains

Chain j

50S ribosomal protein L17

Chain o

50S ribosomal protein L22